cospar.datasets.reprogramming_Day0_3_28

cospar.datasets.reprogramming_Day0_3_28(data_des='Reprog_128')

The reprogramming dataset from

• Biddy, B. A. et al. Single-cell mapping of lineage and identity in direct reprogramming. Nature 564, 219–224 (2018).

This dataset has time points on day 0, day 3, and day 28. Only day 28 has clonal information. The cells are barcoded over 3 rounds during the entire differentiation process. There are multiple ways to assemble the barcodes on day 0, day 3, and day 13 into a clonal ID. Below, we concatenate barcodes on day 0 and day 13, as in the original analysis.

Parameters

data_des : str

A key to label this dataset.