cospar.pl.clones_on_manifold

cospar.pl.clones_on_manifold(adata, selected_clone_list=[0], color_list=['red', 'blue', 'purple', 'green', 'cyan', 'black'], selected_annotation_key='time_info', selected_annotation_info=None, title=None, clone_markersize=12, clone_markeredgewidth=1, markeredgecolor='black', **kwargs)

Plot clones on top of state embedding.

Parameters

adata : AnnData object

selected_clone_list : list

List of selected clone ID’s.

color_list : list, optional (default: [‘red’,’blue’,’purple’,’green’,’cyan’,’black’])

The list of color that defines color at respective time points.

selected_annotation_info : list, optional (default: all)

Select time points to show corresponding states. If set to be [], use all states.

title : None

Default, show the clone id as panel title. Otherwise, show the text string from input ‘title’

clone_markersize : int, optional (default: 12)

Clone marker size

clone_markeredgewidth : int, optional (default: 1)

Edige size for clone marker