cospar.pl.gene_expression_on_manifold

cospar.pl.gene_expression_on_manifold(adata, selected_genes, savefig=False, selected_times=None, color_bar=False)

Plot gene expression on the state manifold.

Parameters

adata : AnnData object

Assume to contain transition maps at adata.uns.

selected_genes : list or ‘str’

List of genes to plot.

savefig : bool, optional (default: False)

Save the figure.

selected_times : list, optional (default: all)

A list of time points to further restrict the cell states to plot. If map_backward=True, plot initial states that are among these time points; otherwise, show later states that are among these time points.

color_bar : bool, (default: False)

If True, plot the color bar.